1- Ahmed, E., D., Z. Jianhong and D. U. Yuchun. 2016. Systematic Proteomic Identification of the Heat Shock Proteins (Hsp) that Interact with Estrogen Receptor Alpha (ERα) and Biochemical Characterization of the ERα- Hsp70 Interaction. PLoS ONE 8: 11.
2- Alwaeely, F. A., K. N. Madlum and M. A. Alsaadi. 2021. Immunomodulatory Effect of Propolis on Foxp3 Gene Expression in Human Peripheral Blood Mononuclear Cells Stimulated in vitro with Pseudomonas Aeruginosa Ag. Archives of Razi Institute. 76: 887-894.
3- Anders, S., P.T. Pyl and W. Huber. 2014. HTSeq - A Python framework to work with highthroughput sequencing data. Bioinformatics. 31(2):166–169.
4- Andrews, S. 2010. FastQC: a quality control tool for high throughput sequence data. Available online:http://bioinformatics.Babraham.ac. uk/projects/fastqc.
5- Bates, M. D. and P. M. Conn. 1984. Calcium mobilization in the pituitary gonadotrope: relative roles of intra- and extracellular sources. Endocrinology 115:1380–1385.
6- Bolger, A., M. Lohse and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. Bioinformatics 30(15),2114-2120.
7- Faeqali Jan, M., H. Muneer Al-Khafaji, B. Hasan Al-Saadi and M. K. Aneed Al-Saedi. 2021. Assessment of Interleukin-8 in Bronchial Asthma in Iraq. Archives of Razi Institute. 76: 913-923.
8- Gomez Redondo, I., R. Fernandez-Gonzalez, R. Laguna-Barraza, E. Pericuesta, K. Horiuchi, J. Valcarcel and A. Gutierrez-Adan. 2018. Impaired folliculogenesis in U12 intron splicing-defective Zrsr2 mutant mice. 51st Annual Meeting in New Orleans 10-13.
9- Kania, E., B. Pajdk and A. Orzechowski1. 2015. Calcium Homeostasis and ER Stress in Control of Autophagy in Cancer Cells. BioMed Research International. Article ID 352794, 12 pages.
10- Kim D., B. Langmead and S. L. Salzberg. 2015. HISAT: a fast spliced aligner with low memory requirements. Nature methods 12:357-360.
11- Kim, Y.D., J. Lee, H.S. Kim, M.O. Lee, M.S. Son, C.H. Yoo. and J. K. Choi. 2017. The unique spliceosome signature of human pluripotent stem cells is mediated by SNRPA1, SNRPD1, and PNN. Stem Cell Research 22, 43-53.
12- Mingming, L.E.I., Q.I.N. Qingming and S.H.I. Zhendan. 2020. Transcriptome analysis to unravel the gene expression profile of ovarian follicular development in Magang goose. Reproduction and Development 66, 4.
13- Nilsen, T.W. and B.R. Graveley. 2010. Expansion of the eukaryotic proteome by alternative splicing. Nature 463: 457– 463.
14- Planells, B., L. Gomez-Redondo, E. Pericuesta, P. Lonergan, A. Gutierrez and A. Adan. 2019. Differential isoform expression and alternative splicing in sex determination in mice. BMC Genomics 20:202.
15- Reed, R., J. Griffith and T. Maniatis. 1988. Purification and visualization of native spliceosomes. Cell 53, 949–961.
16- Ritchie, M.E., B. Phipson, D. Wu, Y. Hu, C.W. Law and W. Shi. 2015. Limma powers differential expression analyses for RNA-sequencing and and microarray studies. Nucleic Acids Research 43, 7.
17- Liu, H, J. Wang, L. Li, C. Han and H. Xu. 2018. Transcriptome analysis revealed the possible regulatory pathways initiating female geese broodiness within the hypothalamic-pituitary-gonadal axis. PLoS ONE 13, 2.
18- Luhrmann, R., B. Kastner and M. Bach. 1990. Structure of spliceosomal snRNPs and their role in pre-mRNA splicing. Biochim Biophys. Acta 1087, 265-292.
19- Skelding, K.A., J.A.P. Rostas, M. Nicole and N.M. Verrills. 2011. Controlling the cell cycle: The role of calcium/calmodulin-stimulated protein kinases I and II. Cell Cycle 10:4, 631-639.
20- Takata, K., M. Otsuka, T. Kishikawa, Y. Kudo, T. Goto, H. Yoshida and K. Koike. 2012. A miRNA machinery component DDX20 controls NF-κB via microRNA-140 function. Biochemical and Biophysical Research Communications. 420 (3): 564–569.
21- Wahl, M.C., C.L. Will and R. Luhrmann. 2009. The spliceosome: design principles of a dynamic RNP machine. Cell. 136(4):701-719.
22- Wang, Z. and C.B. Burge. 2008. Splicing regulation: From a parts list of regulatory elements to an integrated splicing code. RNA 14: 802–813.
23- Ward, A.J. and T.A. Cooper. 2010. The pathobiology of splicing. Pathol 220: 152–163.
24- Xie, J., and D.L. Black. 2001. A CaMK IV responsive RNA element mediates depolarization-induced alternative splicing of ion channels. Nature 410:936-939.
25- Xie, S., X. Yang, D. Wang, F. Zhu, N. Yang and Z. Hou. 2017. Thyroid transcriptome analysis reveals different adaptive responses to cold environmental conditions between two chicken breeds. PLoS ONE 13(1).
26- Ye, P., Ge, K., Li, M., Yang, L., Jin, S. Zhang, C., Chen, X. and Geng, Z. 2019. Egg-laying and brooding stage-specific hormonal response and transcriptional regulation in pituitary of Muscovy duck (Cairina moschata). Poultry Science 98:5287–5296.
27- Yu, J., Y. Lou and A. Zhao. 2016. Transcriptome analysis of follicles reveals the importance of autophagy and hormones in regulating broodiness of Zhedong white goose. Scientific Reports 6,36877.
