- Abod, É., Laslo, É., Szentes, S., Lányi, S., & Mara, G. (2019). Plant growth-promoting bacteria: strategies to improve wheat growth and development under sustainable agriculture. Plant Growth Promoting Rhizobacteria for Agricultural Sustainability: From Theory to Practices, 1-17.
- Agafonova, N., Doronina, N., Kaparullina, E., Fedorov, D., Gafarov, A., Sazonova, O., Sokolov, S., & Trotsenko, Y. A. (2017). A novel Delftia plant symbiont capable of autotrophic methylotrophy. Microbiology, 86, 96-105.
- Al-Maliki, S., & Ebreesum, H. (2020). Changes in soil carbon mineralization, soil microbes, roots density and soil structure following the application of the arbuscular mycorrhizal fungi and green algae in the arid saline soil. Rhizosphere, 14, 100203.
- Alikhani, H. A., Ahmadi, H., Etesami, H., Noroozi, M., Rahmani, H. A., & Emami, S. (2023). Studies on Autotrophic Components of Periphyton in Some Iranian Aquatic Ecosystems. International Journal of Environmental Research, 17(2), 24.
- Alikhani, H. A., Beheshti, M., Pourbabaee, A. A., Etesami, H., Asadi Rahmani, H., & Noroozi, M. (2023). Phosphorus Use Management in Paddy Fields by Enriching Periphyton with Its Phosphate-Solubilizing Bacteria and Fungi at the Late Stage of Rice Growth. Journal of Soil Science and Plant Nutrition, 23(2), 1896-1912. https://doi.org/10.1007/s42729-023-01145-2
- Alikhani, H., Ahmadi, H., Etesami, H., Noroozi, M., Asadi Rahmani, H., & Emami, S. (2021). Study of periphyton (algae flora) community in aquatic ecosystems of Guilan province. Journal of Soil Biology, 9(1), 29-39. (In Persian).
- Álvarez, C., Jiménez-Ríos, L., Iniesta-Pallarés, M., Jurado-Flores, A., Molina-Heredia, F. P., Ng, C. K., & Mariscal, V. (2023). Symbiosis between cyanobacteria and plants: from molecular studies to agronomic applications. Journal of Experimental Botany, 74(19), 6145-6157.
- Álvarez, C., Navarro, J. A., Molina-Heredia, F. P., & Mariscal, V. (2020). Endophytic colonization of rice (Oryza sativa L.) by the symbiotic strain Nostoc punctiforme PCC 73102. Molecular Plant-Microbe Interactions, 33(8), 1040-1045.
- Arnon, D. I. (1949). Copper enzymes in isolated chloroplasts. Polyphenoloxidase in Beta vulgaris. Plant Physiology, 24(1), 1.
- Arvind, G., Sood, S., Rahi, P., Thakur, R., Chauhan, S., & Nee Chadha, I. C. (2011). Diversity analysis of diazotrophic bacteria associated with the roots of tea (Camellia sinensis (L.) O. Kuntze). Journal of microbiology and biotechnology, 21(6), 545-555.
- Bahadur, I., Maurya, R., Roy, P., & Kumar, A. (2019). Potassium-solubilizing bacteria (KSB): a microbial tool for K-solubility, cycling, and availability to plants. Plant Growth Promoting Rhizobacteria for Agricultural Sustainability: From Theory to Practices, 257-265.
- Baird, R. B., Eaton, A. D., & Rice, E. W. (Eds.). (2017). Standard methods for the examination of water and wastewater. American Public Health Association.
- Bao, J., Zhuo, C., Zhang, D., Li, Y., Hu, F., Li, H., Su, Z., Liang, Y., & He, H. (2021). Potential applicability of a cyanobacterium as a biofertilizer and biopesticide in rice fields. Plant and Soil, 463, 97-112.
- Beheshti, M., Alikhani, H. A., Pourbabaee, A. A., Etesami, H., Asadi Rahmani, H., & Noroozi, M. (2022). Enriching periphyton with phosphate-solubilizing microorganisms improves the growth and concentration of phosphorus and micronutrients of rice plant in calcareous paddy soil. Rhizosphere, 24, 100590. https://doi.org/10.1016/j.rhisph.2022.100590
- Beheshti, M., Alikhani, H. A., Pourbabaee, A. A., Etesami, H., Asadi Rahmani, H., & Noroozi, M. (2021). Periphytic biofilm and rice rhizosphere phosphate-solubilizing bacteria and fungi: A possible use for activating occluded P in periphytic biofilms in paddy fields. Rhizosphere, 19, 100395. https://doi.org/https://doi.org/10.1016/j.rhisph.2021.100395
- Bharti, A., Velmourougane, K., & Prasanna, R. (2017). Phototrophic biofilms: diversity, ecology and applications. Journal of Applied Phycology, 29, 2729-2744.
- Borsodi, A. K., Rusznyák, A., Molnár, P., Vladár, P., Reskóné, M. N., Tóth, E. M., Sipos, R., Gedeon, G., & Márialigeti, K. (2007). Metabolic activity and phylogenetic diversity of reed (Phragmites australis) periphyton bacterial communities in a Hungarian shallow soda lake. Microbial ecology, 53, 612-620.
- Bremner, J., & Keeney, D. (1966). Determination and isotope‐ratio analysis of different forms of nitrogen in soils: 3. Exchangeable ammonium, nitrate, and nitrite by extraction‐distillation methods. Soil Science Society of America Journal, 30(5), 577-582.
- Chen, X., Chen, X., Zhao, Y., Zhou, H., Xiong, X., & Wu, C. (2020). Effects of microplastic biofilms on nutrient cycling in simulated freshwater systems. Science of the Total Environment, 719, 137276.
- Chen, Z., Dolfing, J., Zhuang, S., & Wu, Y. (2022). Periphytic biofilms-mediated microbial interactions and their impact on the nitrogen cycle in rice paddies. Eco-environment & health, 1(3), 172-180.
- Ding, L.-J., Cui, H.-L., Nie, S.-A., Long, X.-E., Duan, G.-L., & Zhu, Y.-G. (2019). Microbiomes inhabiting rice roots and rhizosphere. FEMS Microbiology Ecology, 95(5), fiz040.
- Etesami, H. (2019). Plant growth promotion and suppression of fungal pathogens in rice (Oryza sativa L.) by plant growth-promoting bacteria. Field crops: sustainable management by PGPR, 351-383.
- Gholami, M., Sharifi, Z., Karami, Z., Haghighi, S., Minouei, S. F., Zema, D. A., & Lucas-Borja, M. E. (2020). The potential impacts of soil sampling on erosion. International Journal of Environmental Science and Technology, 17, 4909-4916.
- Haghani, Z., Alikhani, H. A., Amirhosseini, K., Emami, S., & Etesami, H. (2024). Assessing the potential of functionally-enhanced periphyton in supplying rice plant phosphorus nutrition in paddy fields. Rhizosphere, 31, 100951. https://doi.org/https://doi.org/10.1016/j.rhisph.2024.100951
- Han, J., Sun, L., Dong, X., Cai, Z., Sun, X., Yang, H., Wang, Y., & Song, W. (2005). Characterization of a novel plant growth-promoting bacteria strain Delftia tsuruhatensis HR4 both as a diazotroph and a potential biocontrol agent against various plant pathogens. Systematic and applied microbiology, 28(1), 66-76.
- Inglett, P., Reddy, K., & McCormick, P. (2004). Periphyton chemistry and nitrogenase activity in a northern Everglades ecosystem. Biogeochemistry, 67, 213-233.
- Iniesta-Pallarés, M., Álvarez, C., Gordillo-Cantón, F. M., Ramírez-Moncayo, C., Alves-Martínez, P., Molina-Heredia, F. P., & Mariscal, V. (2021). Sustaining rice production through biofertilization with N2-fixing cyanobacteria. Applied Sciences, 11(10), 4628.
- Jaggi, W. (1976). Die Bestimmung der CO_2-Bildung als Maβ der bodenbiologischen Aktivitat. Schweiz Landwietschaft Forschung Band, 15(314), 317-380.
- Jain, D., Saheewala, H., Sanadhaya, S., Joshi, A., Bhojiya, A. A., Verma, A. K., & Mohanty, S. R. (2022). Potassium solubilizing microorganisms as soil health engineers: An insight into molecular mechanism. In Rhizosphere engineering (pp. 199-214). Elsevier.
- Jaiswal, P., Dhar, D. W., Sharma, N., Jain, S., Nehra, P., Singh, B., Singh, Y., & Saxena, S. (2021). Evaluating the role of endophytic cyanobacterial isolates on growth promotion and N/P status of rice crop. Vegetos, 1-7.
- Jalali, M., Antoniadis, V., & Najafi, S. (2021). Assessment of trace element pollution in northern and western Iranian agricultural soils: a review. Environmental Monitoring and Assessment, 193, 1-30.
- John, D. M., Whitton, B. A., & Brook, A. J. (2002). The freshwater algal flora of the British Isles: An identification guide to freshwater and terrestrial algae. Cambridge University Press.
- Jones, J. B. (2001). Laboratory guide for conducting soil tests and plant analysis. CRC press.
- Jørgensen, N. O., Brandt, K. K., Nybroe, O., & Hansen, M. (2009). Delftia lacustris sp. nov., a peptidoglycan-degrading bacterium from fresh water, and emended description of Delftia tsuruhatensis as a peptidoglycan-degrading bacterium. International journal of systematic and evolutionary microbiology, 59(9), 2195-2199.
- Karageorgiou, K., Paschalis, M., & Anastassakis, G. N. (2007). Removal of phosphate species from solution by adsorption onto calcite used as natural adsorbent. Journal of Hazardous Materials, 139(3), 447-452.
- Keeney, D., & Bremner, J. (1966). A chemical index of soil nitrogen availability. Nature, 211(5051), 892-893.
- Khosravi, H., Otadi, A., Alikhani, H., & Etesami, H. (2025). Evaluation and Comparative Analysis of Plant Growth-Promoting Traits in Diverse Groups of Rhizosphere Bacteria. Journal of Soil Biology, 12(2), 235-260. (In Persian).
- Khumairah, F. H., Setiawati, M. R., Fitriatin, B. N., Simarmata, T., Alfaraj, S., Ansari, M. J., Enshasy, H. A. E., Sayyed, R., & Najafi, S. (2022). Halotolerant plant growth-promoting rhizobacteria isolated from saline soil improve nitrogen fixation and alleviate salt stress in rice plants. Frontiers in microbiology, 13, 905210.
- Knudsen, D., Peterson, G., & Pratt, P. (1982). Lithium, sodium, and potassium. Methods of soil analysis: part 2 chemical and microbiological properties, 9, 225-246.
- Kouchaki-Penchah, H., Alizadeh, M. R., & Aghamolki, M. T. K. (2023). Measuring eco-efficiency of rice cropping systems in Iran: An integrated economic and environmental approach. Sustainable Energy Technologies and Assessments, 57, 103281.
- Leylasi Marand, M., Alikhani, H., Pourbabaee, A. A., & Shariati, S. (2025). Comparison of the plant growth-stimulating ability of epiphyton and epiphyton microbial communities in some rice fields of Guilan province. Journal of Soil Biology. (In Persian).
- Liao, X., & Inglett, P. W. (2012). Biological nitrogen fixation in periphyton of native and restored Everglades marl prairies. Wetlands, 32, 137-148.
- Liao, X., & Inglett, P. W. (2014). Dynamics of periphyton nitrogen fixation in short-hydroperiod wetlands revealed by high-resolution seasonal sampling. Hydrobiologia, 722, 263-277.
- Lightenthaler, H. K. (1987). Chlorophylls and carotenoids: pigments of photosynthetic biomembranes. Methods in Enzymology, 148, 350-382.
- Liu, Y., Hu, B., & Chu, C. (2023). Toward improving nitrogen use efficiency in rice: Utilization, coordination, and availability. Current Opinion in Plant Biology, 71, 102327.
- Lu, H., Liu, J., Kerr, P. G., Shao, H., & Wu, Y. (2017). The effect of periphyton on seed germination and seedling growth of rice (Oryza sativa) in paddy area. Science of the Total Environment, 578, 74-80.
- Mahmud, K., Makaju, S., Ibrahim, R., & Missaoui, A. (2020). Current progress in nitrogen fixing plants and microbiome research. Plants, 9(1), 97.
- Olsen, S. R. (1954). Estimation of available phosphorus in soils by extraction with sodium bicarbonate. US Department of Agriculture.
- Prasanna, R., Adak, A., Verma, S., Bidyarani, N., Babu, S., Pal, M., Shivay, Y. S., & Nain, L. (2015). Cyanobacterial inoculation in rice grown under flooded and SRI modes of cultivation elicits differential effects on plant growth and nutrient dynamics. Ecological Engineering, 84, 532-541.
- Prasanna, R., Singh, R. N., Joshi, M., Madhan, K., Pal, R. K., & Nain, L. (2011). Monitoring the biofertilizing potential and establishment of inoculated cyanobacteria in soil using physiological and molecular markers. Journal of Applied Phycology, 23, 301-308.
- Prescott, G. W. (1962). Algae of the western Great Lakes. Otto Koeltz Science Publishers, Koenigstein, Germany.
- Raheb, A., & Heidari, A. (2012). Effects of clay mineralogy and physico-chemical properties on potassium availability under soil aquic conditions. Journal of Soil Science and Plant Nutrition, 12(4), 747-761.
- Reddy, K. R., DeLaune, R. D., & Inglett, P. W. (2022). Biogeochemistry of wetlands: science and applications. CRC press.
- Renuka, N., Guldhe, A., Prasanna, R., Singh, P., & Bux, F. (2018). Microalgae as multi-functional options in modern agriculture: current trends, prospects and challenges. Biotechnology advances, 36(4), 1255-1273.
- Saadatnia, H., & Riahi, H. (2009). Cyanobacteria from paddy fields in Iran as a biofertilizer in rice plants. Plant, Soil and Environment, 55(5), 207-212.
- Saha, S., Bulzu, P.-A., Urajová, P., Mareš, J., Konert, G., Câmara Manoel, J., Macho, M., Ewe, D., Hrouzek, P., & Masojídek, J. (2021). Quorum sensing signals from epibiont mediate the induction of bioactive peptides in mat-forming cyanobacteria Nostoc. BioRxiv, 2021.2004. 2023.441229.
- Soares, R. A., Roesch, L. F. W., Zanatta, G., de Oliveira Camargo, F. A., & Passaglia, L. M. P. (2006). Occurrence and distribution of nitrogen fixing bacterial community associated with oat (Avena sativa) assessed by molecular and microbiological techniques. Applied Soil Ecology, 33(3), 221-234.
- Su, J., Kang, D., Xiang, W., & Wu, C. (2017). Periphyton biofilm development and its role in nutrient cycling in paddy microcosms. Journal of Soils and Sediments, 17, 810-819.
- Tang, A., Haruna, A. O., Majid, N. M. A., & Jalloh, M. B. (2020). Potential PGPR properties of cellulolytic, nitrogen-fixing, phosphate-solubilizing bacteria in rehabilitated tropical forest soil. Microorganisms, 8(3), 442.
- Teikari, J. E., Russo, D. A., Heuser, M., Baumann, O., Zedler, J. A., Liaimer, A., & Dittmann, E. (2024). Competition and interdependence define multifaceted interactions of symbiotic Nostoc sp. and Agrobacterium sp. under inorganic carbon limitation. bioRxiv, 2024.2007. 2016.603663.
- Towfighi, H. (1998). Study of rice response to potassium fertilizer in paddy soils of northern Iran. Iranian Journal of Agricultural Sciences, 29, 869-883.
- Wang, B., Zhou, G., Guo, S., Li, X., Yuan, J., & Hu, A. (2022). Improving Nitrogen Use Efficiency in Rice for Sustainable Agriculture: Strategies and Future Perspectives. Life (Basel), 12(10). https://doi.org/10.3390/life12101653
- Weigelhofer, G., Ramião, J. P., Pitzl, B., Bondar-Kunze, E., & O'Keeffe, J. (2018). Decoupled water-sediment interactions restrict the phosphorus buffer mechanism in agricultural streams. Science of the Total Environment, 628, 44-52.
- Wu, Y., Liu, J., & Rene, E. R. (2018). Periphytic biofilms: a promising nutrient utilization regulator in wetlands. Bioresource technology, 248, 44-48.
- Yaghoubi Khanghahi, M., Pirdashti, H., Rahimian, H., Nematzadeh, G., & Ghajar Sepanlou, M. (2018). Potassium solubilising bacteria (KSB) isolated from rice paddy soil: from isolation, identification to K use efficiency. Symbiosis, 76, 13-23.
- Zhang, X., Davidson, E. A., Mauzerall, D. L., Searchinger, T. D., Dumas, P., & Shen, Y. (2015). Managing nitrogen for sustainable development. Nature, 528(7580), 51-59.
|