تنوع ژنتیکی بین جمعیت‌های مختلف گل‌گندم بوته‌ای در ایران با استفاده از نشانگرهای SCoT

Abd-dada, H., Bouda, S., Khachtib, Y.  Bella, Y.A. & Haddioui, A. 2023. Use of ISSR markers to assess the genetic diversity of an endemic plant of Morocco (Euphorbia resinifera O. Berg). Journal of Genetic Engineering and Biotechnology 21(1): 91. DOI: 10.1186/s43141-023-00543-4.

Adhikari, S., Biswas, A., Saha, S., Bandyopadhyay, T.K. & Ghosh, P. 2022. AFLP-based assessment of genetic variation in certain Indian elite cultivars of Cymbopogon species. Journal of Applied Research on Medicinal and Aromatic Plants 29: 100372. DOI: 10.1016/j.jarmap.2022.100372.

Agarwal, M., Shrivastava, N. & Padh, H. 2008 Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Reports 27: 617–631. DOI: 10.1007/s00299-008-0507-z.

Atasagun. B. 2022. Assessment of the genetic diversity of a critically endangered species Centaurea amaena (Asteraceae). Archives of Biological Sciences 74(4): 325–332. DOI: 10.2298/ABS220826031A.

Atia, M.A.M., El-Moneim, D.A., Abdelmoneim, T.K., Reda, E.H., Shakour, Z.T.A., El-Halawany, A.M., El-Kashoury, E.S.A., Shams, K.H., Abdel-Azim, N.S. & Hegazy, M.E.F. 2021. Evaluation of genetic variability and relatedness among eight Centaurea species through CAAT-box derived polymorphism (CBDP) and start codon targeted polymorphism (SCoT) markers. Biotechnology & Biotechnological Equipment 35(1): 1230–1237. DOI: 10.1080/13102818.2021.1960891.

Bassin, S., Kölliker, R., Cretton, C., Bertossa, M., Widmer, F., Bungener, P. & Fuhrer, J. 2004. Intra-specific variability of ozone sensitivity in Centaurea jacea L., a potential bioindicator for elevated ozone concentrations. Environmental Pollution 131(1): 1–12. DOI: 10.1016/j.envpol.2004.02.014.

Burridge, A.J., Winfield, M., Przewieslik-Allen, A., Edwards, K.J., Siddique, I., Barral-Arca, R., Griffiths, S., Cheng, S., Huang, Z., Feng, C., Dreisigacker, S., Bentley, A.R., Brown-Guedira, G. & Barker, G.L. 2024. Development of a next generation SNP genotyping array for wheat. Plant Biotechnology Journal 22(8): 2235–2247. DOI: 10.1111/pbi.14341.

Collard, B.C.Y. & Mackill, D.J. 2009. Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants. Plant Molecular Biology Reports 27: 86–93. DOI: 10.1007/s11105-008-0060-5.

Essa, N.M., Ibrahim, A.A. & Soliman, M.I. 2024. Association study between some cultivated species and their wild relatives from Apiaceae, Asteraceae and Brassicaceae families based on molecular and DNA barcoding in Egypt. Genetic Resources and Crop Evolution 71: 1125–1143. DOI: 10.1007/s10722-023-01681-x.

Etminan, A., Pour-Aboughadareh, A., Noori, A., Ahmadi-Rad, A., Shooshtari, L., Mahdavian, Z. & Yousefiazar-Khanian, M. 2018. Genetic relationships and diversity among wild Salvia accessions revealed by ISSR and SCoT markers. Biotechnology & Biotechnological Equipment 32(3): 610e617. DOI: 10.1080/13102818.2018.1447397.

Evanno, G., Regnaut, S. & Goudet, J. 2005. Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology 14: 2611e2620. DOI: 10.1111/j.1365-294X.2005.02553.x.

Falush, D., Stephens, M. & Pritchard, J.K. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164(4): 1567–1587. DOI: 10.1093/genetics/164.4.1567.

Ferriol, M., Garmendia, A., Ruiz, J.J., Merle, H. & Boira, H. 2012. Morphological and molecular analysis of natural hybrids between the diploid Centaurea aspera L. and the tetraploid C. seridis L. (Compositae). Plant Biosystems 146(Suppl.):
86–100.‏ DOI: 10.1080/11263504.2012.727878.

Freville, H., Justy, F. & Olivieri, I. 2001. Comparative allozyme and microsatellite population structure in a narrow endemic plant species, Centaurea corymbosa Pourret (Asteraceae). Molecular Ecology 10(4): 879–89. DOI: 10.1046/j.1365-294x.2001.01249.x.

Funk, V.A., Bayer, R.J., Keeley, S., Chan, R., Watson, L., Gemeinholzer, B., Schilling, E., Panero, J.L., Baldwin, B.G., Garcia- Jacas, N., Susanna, A. & Jansen, R.K. 2005. Everywhere but Antarctica: using a super tree to understand the diversity and distribution of the Compositae. Biologiske Skrifter 55: 343–374. https://repository.si.edu/handle/10088/11397.

Garcia-Jacas, N., Susanna, A., Mozaffarian, V. & Ilarslan, R. 2000. The natural delimitation of Centaurea (Asteraceae: Cardueae): ITS sequence analysis of the Centaurea jacea group. Plant Systematics and Evolution 223(3): 185–199. DOI: 10.1007/BF00985278.

Ghasemi, E. & Toluei, T. 2020. Intraspecific variations and biological relationships of different populations of Centaurea virgata Lamark (Asteraceae) in Iran. Iranian Journal of Genetics and Plant Breeding 9(1): 61–69. DOI: 20.1001.1.22519610.2020.9.1.7.9.

Gulsen, O., Sever-Mutlu, S., Mutlu, N., Tuna, M., Karaguzel, O., Shearman, R.C., Riordan, T.P. & Heng-Moss, T.M. 2009. Polyploidy creates higher diversity among Cynodon accessions as assessed by molecular markers. Theoretical and Applied Genetics 118: 1309–1319. DOI: 10.1007/s00122-009-0982-9.

Hellwig, F.H. 2004. Centaureinae (Asteraceae) in the Mediterranean-history of ecogeographical radiation. Plant Systematics and Evolution 246(3–4): 137–162.‏ DOI: 10.1007/s00606-004-0150-2.

Huang, W., Zhao, X., Li, Y. & Lian, J. 2016. Effects of environmental factors on genetic diversity of Caragana microphylla in Horqin sandy land, northeast China. Ecology and Evolution 6(22): 8256–8266. DOI: 10.1002/ece3.2549.

Ismail, R.Y., Muhammed, J.J. & Sinjare, D.Y. 2024. Phylogenetic study of ten species from Centaurea (Asteraceae) in Duhok city, Kurdistan region-Iraq. Science Journal of University of Zakho 12(3): 277–284. DOI: 10.25271/sjuoz.2024.12.3.1279.

Jedrzejczyk, I. 2020. Genome size and SCoT markers as tools for identification and genetic diversity assessment in Echinacea genus. Industrial Crops and Products 144: 112055. DOI: 10.1016/j.indcrop.2019.112055.

Jèssica, R., López-Pujol, J., Carnicero, P., Susanna, A. & Garcia-Jacas, N. 2020. The Centaurea alba complex in theIberian Peninsula: gene flow, introgression, and blurred genetic boundaries. Plant Systematics and Evolution 306(2): 1–21. DOI: 10.1007/s00606-020-01669-5.

Kader, A., Sinha, S.N. & Ghosh, P. 2023. ISSR markers endorsed genetically stable plants regeneration of neem (Azadirachta indica A. Juss.) through indirect organogenesis using different explants. Molecular Biology Reports 50(9): 7305–7317. DOI: 10.1007/s11033-023-08655-3.

Kazemeini, F., Asri, Y., Mostafavi, G., Kalvandi, R. & Mehregan, I. 2020. RAPD-based evaluation of genetic diversity among populations of the Iranian endemic species Rhabdosciadium aucheri Boiss. (Apiaceae). Molecular Biology Reports 47(12): 9345–9352. DOI: 10.1007/s11033-020-06028-8.

Khanam, S., Sham, A., Bennetgen, J.L. & Mohammed, A.M.A. 2012. Analysis of molecular marker-based characterization and genetic variation in date palm (Phoenix dactylifera L.). Australian Journal of Crop Science 6(8): 1236–1244. https://www.cropj.com/khanam_6_8_2012_1236_1244.pdf.

Lopez, L. & Barreiro, R. 2013. Genetic guidelines for the conservation of the endangered polyploid Centaurea borjae (Asteraceae). Journal of Plant Research 126(1): 81–93.‏ DOI: 10.1007/s10265-012-0497-3.

López-Vinyallonga, S., López-Pujol, J., Constantinidis, T., Susanna, A. & Garcia-Jacas, N. 2015. Mountains and refuges: Genetic structure and evolutionary history in closely related, endemic Centaurea in continental Greece. Molecular Phylogenetics and Evolution 92: 243–54. DOI: 10.1016/j.ympev.2015.06.018.

Lovejoy, T.E & Hannah, L.J. 2005. Climate Change and Biodiversity, Yale University Press, New Haven, CT. 

Mallón, R., Rodríguez-Oubiña, J. & González, M.L. 2010. In vitro propagation of the endangered plant Centaurea ultreiae: assessment of genetic stability by cytological studies, flow cytometry and RAPD analysis. Plant Cell, Tissue and Organ Culture 101(1): 31–39.‏ DOI: 10.1007/s11240-009-9659-y.

Mameli, G., Filigheddu, R., Binelli, G. & Meloni, M. 2008. The genetic structure of the remnant populations of Centaurea horrida in Sardinia and associated islands. Annals of Botany 101(5): 633–640.‏ DOI: 10.1093/aob/mcn012.

Moreyra, L.D., Márquez, F., Susanna, A., Garcia-Jacas, N., Vázquez, F.M. & López-Pujol, J. 2021. Genesis, evolution, and genetic diversity of the hexaploid, narrow endemic Centaurea tentudaica. Diversity 13(2): 72. DOI: 10.3390/d13020072.

Mukhopadhyay, M., Mondal, T.K. & Chand, P.K. 2016. Biotechnological advances in tea (Camellia sinensis [L.] O. Kuntze): a review. Plant Cell Reports 35(2): 255–287. DOI: 10.3390/d13020072.

Nei, M. & Li, W.H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. The Proceedings of the National Academy of Sciences 76(10): 5269–5273. DOI: 10.1073/pnas.76.10.5269.

Novakovi´c, J., Jana´ckovi´c, P., Susanna, A., Lazarevi´c, M., Borši´c, I., Milanovici, S., Lakuši´c, D., Zlatkovi´c, B., Marin, P.D. & Garcia-Jacas, N. 2022. Molecular insights into the Centaurea Calocephala complex (Compositae) from the Balkans - Does phylogeny match systematics? Diversity 14(5): 394. DOI: 10.3390/d14050394.

Nurmansyah Alghamdi, S.S., Migdadi, H.M., Khan, M.A. & Afzal, M. 2020. AFLP-based analysis of variation and population structure in mutagenesis induced Faba Bean. Diversity 12(8): 303. DOI: 10.3390/d12080303.

Page, R.D. 1996. Tree View: an application to display phylogenetic trees on personal computers. Bioinformatics 12(4): 357–358. DOI: 10.1093/bioinformatics/12.4.357.

Peakall, R. & Smouse, P.E. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28(19): 2537–2539. DOI: 10.1093/bioinformatics/bts460.

Plants of the World Online (POWO). Facilitated by the Royal Botanic Gardens, Kew [Published
on the Internet, cited 5 Aug. 2024]. https://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:330045-2.

Pritchard, J.K., Stephens, M. & Donnelly, P. 2000. Inference of population structure using multi locus genotype data. Genetics 155(2): 945–959. DOI: 10.1093/genetics/155.2.945.

Quinones-Perez, C.Z., Saenz Romero, C. & Wehenkel, C. 2014. Genetic diversity and conservation of Picea chihuahuana Martinez: a review. African Journal of Biotechnology 13(28): 2786–2795. DOI: 10.5897/AJB2014.13645.

Rai, MK. 2023. Start codon targeted (SCoT) polymorphism marker in plant genome analysis: current status and prospects. Planta 257(2): 34. DOI: 10.1007/s00425-023-04067-6.

Rechinger, K.H. 1987. Flora iranica: Akademische Druck-u. Verlagsanstalt: Graz.

Doyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11–15. https://worldveg.tind.io/record/33886.

Samarina, L.S., Malyarovskaya, V.I., Reim, S., Yakushina, L.G., Koninskaya, N.G., Klemeshova, K.V., Shkhalakhova, R.M., Matskiv, A.O., Shurkina, E.S., Gabueva, T.Y., Slepchenko, N.A. & Ryndin, A.V. 2021. Transferability of ISSR, SCoT and SSR markers for Chrysanthemum × Morifolium Ramat and genetic relationships among commercial Russian cultivars. Plants 10(7): 1302. DOI: 10.3390/plants10071302.

Serrote, C.M.L., Reiniger, L.R.S., Silva, K.B., Rabaiolli, S.M.D.S. & Stefanel, C.M. 2020. Determining the polymorphism information content of a molecular marker. Gene 726: 144175. DOI: https://doi.org/10.1016/j.gene.2019.144175.

Smith, J.S.C., Chin, E.C., Shu, H., Smith, O.S., Wall, S.J., Senior, M.L., Mitchell, S.E., Kresovich, S. & Ziegle, J. 1996. An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.) comparisons with data from RFLPs and pedigree. Theoretical and Applied Genetics 95: 163–173. DOI: 10.1007/s001220050544.

Sözen, E. & Özaydın, B. 2009. A preliminary study on the genetic diversity of the critically endangered Centaurea nivea (Asteraceae). Annales
Botanici Fennici 46(6): 541–548. DOI: 10.5735/085.046.0606.

Sozen, E. & Ozaydin, B. 2010. A study of genetic variation in endemic plant Centaurea wiedemanniana by using RAPD markers. Ecology 19(77): 1–8.‏ DOI: 10.5053/ekoloji.2010.771.

Swofford, D.L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.

Uysal, T., Özel, E., Bozkurt, M. & Ertuğrul, K. 2012. Genetic diversity in threatened populations of the endemic species Centaurea lycaonica Boiss. & Heldr. (Asteraceae). Research Journal of Biological Sciences 2(3): 110–116. https://api.semanticscholar.org/CorpusID:73718811.

Wang, H., Bai, Y. & Biligetu, B. 2024. Effects of SNP marker density and training population size on prediction accuracy in alfalfa (Medicago sativa L.) genomic selection. The Plant Genome 17: e20431. DOI: 10.1002/tpg2.20431.

Wolanin, M., Klichowska, E., Jedrzejczyk, I., Rewers, M. & Nobis, M. 2023. Taxonomy and distribution of Taraxacum sect. Erythrosperma (Asteraceae) in Poland. PhytoKeys 224: 1–88. DOI: 10.3897/phytokeys.224.99463.

Wu, K., Liu, Y., Yang, B., Kung, Y., Chang, K. & Lee, M. 2022. Rapid discrimination of the native medicinal plant Adenostemma lavenia from its adulterants using PCR-RFLP. Peer Journal 10: e13924. DOI: 10.7717/peerj.13924.

Yeh, F.C. & Boyle, T.J.B. 1997. Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belgian Journal of Botany 129: 157–163. https://www.sid.ir/paper/571184/en.