Colletotrichum species associated with some wild grasses in Iran; Two new records for the Funga of Iran

Alizadeh, A., Javan-Nikkhah, M., Nourmohammadi Nazarian, R., Liu, F., Zare, R., et al. 2022. New species of Colletotrichum from wild Poaceae and Cyperaceae plants in Iran. Mycologia 114: 89–113.

Alizadeh, A., Javan-Nikkhah, M., Zare, R., Fotouhifar, K.B., Damm, U., et al. 2015. New records of Colletotrichum species for the mycobiota of Iran. Mycologia Iranica 2: 95–109.

Bhunjun, C.S., Phukhamsakda, C., Jayawardena, R.S., Jeewon, R., Promputtha, I., et al. 2021. Investigating species boundaries in Colletotrichum. Fungal Diversity 107: 107–127.

Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B., Waller, J., et al., 2009. A polyphasic approach for studying Colletotrichum. Fungal Diversity 39: 183–204.

Cannon, P.F., Damm, U., Johnston, P.R. and Weir, B.S., 2012. Colletotrichum: current status and future directions. Studies in mycology 73: 181–213.

Carbone, I. and Kohn, L.M., 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553–556.

Chen, Y., Fu, D., Wang, W., Gleason, M.L., Zhang, R., et al. 2022. Diversity of Colletotrichum species causing apple bitter rot and Glomerella leaf spot in China. Journal of Fungi 8: 740.

Crouch, J.A. and Tomaso-Peterson, M., 2012. Anthracnose disease of centipedegrass turf caused by Colletotrichum eremochloae, a new fungal species closely related to Colletotrichum sublineola. Mycologia 104: 1085–1096.

Crouch, J.A., Beirn, L.A., Cortese, L.M., Bonos, S.A. and Clarke, B.B., 2009. Anthracnose disease of switchgrass caused by the novel fungal species Colletotrichum navitas. Mycological research 113: 1411–1421.

Crouch, J.A. and Beirn, L.A., 2009. Anthracnose of cereals and grasses. Fungal Diversity 39: 19.

Crouch, J.A., Clarke, B.B., White Jr, J.F. and Hillman, B.I., 2009. Systematic analysis of the falcate-spored graminicolous Colletotrichum and a description of six new species from warm-season grasses. Mycologia 101: 717–732.

Crouch, J.A., Tredway, L.P., Clarke, B.B. and Hillman, B.I., 2009. Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities. Molecular ecology 18: 123–135.

Crouch, J.A., 2014. Colletotrichum caudatum sl is a species complex. IMA fungus 5: 17–30.

Crous, P.W., Verkley, G.J.M., Groenewald, J.Z. and Houbraken, J.eds., 2019. Fungal Biodiversity. Westerdijk Laboratory Manual Series. Utrecht, The Netherlands: Westerdijk Fungal Biodiversity Institute. 425.

Damm, U., Cannon, P.F., Liu, F., Barreto, R.W., Guatimosim, E., et al. 2013. The Colletotrichum orbiculare species complex: Important pathogens of field crops and weeds. Fungal Diversity 61: 29–59.

Damm, U., Cannon, P.F., Woudenberg, J.H.C. and Crous, P.W., 2012a. The Colletotrichum acutatum species complex. Studies in Mycology 73: 37–113.

Damm, U., Cannon, P.F., Woudenberg, J.H.C., Johnston, P.R., Weir, B., et al. 2012b. The Colletotrichum boninense species complex. Studies in Mycology 73: 1–36.

Damm, U., Crous, P.W. and Fourie, P.H., 2007. Botryosphaeriaceae as potential pathogens of Prunus species in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov. Mycologia 99: 664-680.

Damm, U., O'Connell, R.J., Groenewald, J.Z. and Crous, P.W., 2014. The Colletotrichum destructivum species complex - hemibiotrophic pathogens of forage and field crops. Studies in Mycology 79: 49–84.

Damm, U., Sato, T., Alizadeh, A., Groenewald, J.Z. and Crous, P.W., 2019. The Colletotrichum draecaenophilum, C. magnum and C. orchidearum species complexes. Studies in Mycology 92: 1–46.

Damm, U., Woudenberg, J.H.C., Cannon, P.F. and Crous, P.W., 2009. Colletotrichum species with curved conidia from herbaceous hosts. Fungal Diversity 39: 45–87.

de Silva, D.D., Mann, R.C., Kaur, J., Ekanayake, P.N., Sawbridge, T.I., et al. 2021. Revisiting the Colletotrichum species causing anthracnose of almond in Australia. Australasian Plant Pathology 50: 267–279.

Doyle, V.P., Oudemans, P.V., Rehner, S.A. and Litt, A., 2013. Habitat and host indicate lineage identity in Colletotrichum gloeosporioides sl from wild and agricultural landscapes in North America. PLoS One 8: e62394.

Ershad D. 2022. Fungi and fungal analogues of Iran. Iranian Research Institute of Plant Protection, Iran.

Farr, D.F. and Rossman, A.Y., 2023. Fungal Databases, U.S. National Fungus Collections, ARS, USDA. [Retrieved 2023 January 9]. Available online at https://nt.ars-grin.gov/fungaldatabases/.

Glass, N.L. and Donaldson, G.C., 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and environmental microbiology 61: 1323–1330.

Goh, T.K., 1999. Single-spore isolation using a hand-made glass needle. Fungal Diversity 2: 47–63.

Guevara-Suarez, M., Cárdenas, M., Jiménez, P., Afanador-Kafuri, L. and Restrepo, S., 2022. Colletotrichum species complexes associated with crops in Northern South America: a review. Agronomy 12: 548.

Guo, Z., Luo, C.X., Wu, H.J., Peng, B., Kang, B.S., et al. 2022. Colletotrichum species associated with anthracnose disease of watermelon (Citrullus lanatus) in China. Journal of Fungi 8: 790.

Hyde, K.D., Cai, L., McKenzie, E.H.C., Yang, Y.L., Zhang, J.Z., et al. 2009b. Colletotrichum: a catalogue of confusion. Fungal Diversity 39: 1–17.

Jayawardena, R.S., Hyde, K.D., Chen, Y.J., Papp, V., Palla, B., et al. 2020. One stop shop IV: taxonomic update with molecular phylogeny for important phytopathogenic genera: 76–100 (2020). Fungal Diversity 103: 87–218.

Johnston, P.R. and Jones, D., 1997. Relationships among Colletotrichum isolates from fruit-rots assessed using rDNA sequences. Mycologia 89: 420–430.

Katoh, K. and Standley, D.M., 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772–780.

Katoh, K., Rozewicki, J. and Yamada, K.D., 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20:1160–1166.

Li, J., Zheng, H., Yu, Z.F. and Qiao, M., 2022. Colletotrichum litangense sp. nov., Isolated as an endophyte of Hippuris vulgaris, an Aquatic Plant in Sichuan, China. Current Microbiology 79: 161.

Lima, N.B., de A. Batista, M.V., De Morais, M.A., Barbosa, M.A., Michereff, S.J., et al. 2013. Five Colletotrichum species are responsible for mango anthracnose in northeastern Brazil. Fungal Diversity 61: 75–88.

Liu, F., Cai, L., Crous, P.W. and Damm, U., 2014. The Colletotrichum gigasporum species complex. Persoonia-Molecular Phylogeny and Evolution of Fungi 33: 83–97.

Liu, F., Ma, Z.Y., Hou, L.W., Diao, Y.Z., Wu, W.P., et al. 2022. Updating species diversity of Colletotrichum, with a phylogenomic overview. Studies in Mycology 101: 1–56.

Marin-Felix, Y., Groenewald, J.Z., Cai, L., Chen, Q., Marincowitz, S., et al. 2017. Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology 86: 99–216.

Moriwaki, J. and Tsukiboshi, T., 2009. Colletotrichum echinochloae, a new species on Japanese barnyard millet (Echinochloa utilis). Mycoscience 50: 273–280.

Nirenberg, H., 1976. Unterstructure uber die morphologische und biologische differnzierung in der Fusarium-Sektion Liseola. Mitteilungen aus der Biologischen Bundesansatlt fur Landund Forstwirtschaft, Berlin-Dahlem, 169, pp.11–17.

Noroozi, J., Moser, D. and Essl, F., 2016. Diversity, distribution, ecology and description rates of alpine endemic plant species from Iranian mountains. Alpine Botany 126: 1–9.

O'Donnell, K. and Cigelnik, E., 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution, 7: 103–116.

Prihastuti, H., Cai, L., Chen, H., McKenzie, E.H.C. and Hyde, K.D., 2009. Characterization of Colletotrichum species associated with coffee berries in northern Thailand. Fungal Diversity, 39: 89–109.

Rojas, E.I., Rehner, S.A., Samuels, G.J., Van Bael, S.A., Herre, E.A., et al 2010. Colletotrichum gloeosporioides sl associated with Theobroma cacao and other plants in Panama: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes. Mycologia 102: 1318–1338.

Sambrook, J., 2001. Molecular cloning: a laboratory manual/Joseph Sambrook, David W. Russell. Cold Spring Harbor Laboratory. New York, US.

Tan, Q., Schnabel, G., Chaisiri, C., Yin, L.F., Yin, W.X., et al. 2022. Colletotrichum species associated with peaches in China. Journal of Fungi 8: 313.

Tao, G., Liu, Z.Y., Liu, F., Gao, Y.H. and Cai, L., 2013. Endophytic Colletotrichum species from Bletilla ochracea (Orchidaceae), with descriptions of seven new species. Fungal Diversity 61: 139–164.

Vieira, W.A., Lima, W.G., Nascimento, E.S., Michereff, S.J., Câmara, M.P., et al. 2017. The impact of phenotypic and molecular data on the inference of Colletotrichum diversity associated with Musa. Mycologia 109: 912–934.

Viera, W.A.D.S., da Costa, C.A., Camara, M.P.S., Michereff, S.J. and Reis, A., 2023. Colletotrichum menezesiae sp. nov.: a novel species causing anthracnose on chayote in Brazil. Phytotaxa 597: 80–86.

Weir, B., Johnston, P.R., Damm, U., 2012. The Colletotrichum gloeosporioides species complex. Studies in Mycology 73: 115–180.

White, T.J., Bruns, T., Lee, S., Taylor, J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications. Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds: 315–322. Academic Press, USA.

Yu, J., Li, Q., Zhang, W., Bai, P., Huo, J., et al. 2023. First report of Colletotrichum truncatum causing anthracnose of green foxtail (Setaria viridis) in China. Plant Disease 107: 939.

Zafari, D. and Tarah Hamadani, S., 2009. Charactrization of Colletotrichum species from legumes crop plants in Iran. Applied Entomology and Phytopathology 77: 37–58.

Zheng, H., Yu, Z., Jiang, X., Fang, L. and Qiao, M., 2022. Endophytic Colletotrichum species from aquatic plants in southwest China. Journal of Fungi 8: 87.