New records of fungi from rhizosphere of oak trees for Iran fungal flora

Akilli, S., Ulubaş Serçe, Ç., Katırcıoğlu, Y.Z. & Maden, S. 2013. Does Pythium anandrum contribute to the dieback of sessile oak (Quircus petraea) in Turkey?. Forest Pathology 43: 505–508.

Al-Hatmi, A.M., Hagen, F., Menken, S.B., Meis, J.F. & De Hoog, G.S. 2016. Global molecular epidemiology and genetic diversity of Fusarium, a significant emerging group of human opportunists from 1958 to 2015. Emerging Microbes & Infections 5: 1–11.

Alidadi, A., Javan-Nikkhah, M., Kowsari, M., Karami, S. & Ebrahimi Rastaghi, M. 2018. Some species of fungi associated with declined Persian oak trees in Ilam province with emphasis on new records to mycobiota of Iran. Rostaniha 19(2): 75–91.

Al-Shammari, T.A., Bahkali, A.H., Elgorban, A.M., El-Kahky, M.T. & Al-Sum, B.A. 2013. The use of Trichoderma longibrachiatum and Mortierella alpina against root-knot nematode, Meloidogyne javanica on tomato. Journal of Pure and Applied Algebra Microbiology 7: 199–207.

Balci, Y. & Halmschlager, E. 2003. Phytophthora species in oak ecosystems in Turkey and their association with declining oak trees. Plant Pathology 52: 694–702.

Balci, Y., Long, R.P., Mansfield, M., Balser, D. & MacDonald, W.L. 2010. Involvement of Phytophthora species in white oak (Quercus alba) decline in southern Ohio. Forest Pathology 40: 430–442.

Cabañas, R., Castellá, G., Abarca, M.L., Bragulat, M.R. & Cabañes, F.J. 2009. Thiabendazole resistance and mutations in the β-tubulin gene of Penicillium expansum strains isolated from apples and pears with blue mold decay. FEMS Microbiology Letters 297: 189–195.

Comby, M., Lacoste, S., Baillieul, F., Profizi, C. & Dupont, J. 2016. Spatial and temporal variation of cultivable communities of co-occurring endophytes and pathogens in wheat. Frontiers in Microbiology 7: 403.

Edgington, S., Thompson, E., Moore, D., Hughes, K.A. & Bridge, P. 2014. Investigating the insecticidal potential of Geomyces (Myxotrichaceae: Helotiales) and Mortierella (Mortierellacea: Mortierellales) isolated from Antarctica. Springer Plus 3: 289.

Ehrmann, J. & Ritz, K. 2014. Plant: soil interactions in temperate multi-cropping production systems. Plant and Soil 376: 1–29.

Ellis, M.B. 1976. More Dematiaceous Hyphomycetes. Kew, London: Commonwealth Mycological Institute 507 pp.

Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.

Gan, H., Churchill, A.C. & Wickings, K. 2017. Invisible but consequential: root endophytic fungi have variable effects on belowground plant-insect interactions. Ecosphere 8: e01710.

Gray, T.R.G. & Baxby, P. 1968. Chitin decomposition in soil: II. The ecology of chitinoclastic micro-organisms in forest soil. Transactions of the British Mycological Society 51: 293–309.

Guevara-Suarez, M., García, D., Cano-Lira, J.F., Guarro, J. & Gené, J. 2019. Species diversity in Penicillium and Talaromyces from herbivore dung, and the proposal of two new genera of penicillium-like fungi in Aspergillaceae. Fungal Systematics and Evolution 5: 39–75.

Hannula, S.E., De Boer, W. & Van Veen, J.A. 2010. In situ dynamics of soil fungal communities under different genotypes of potato, including a genetically modified cultivar. Soil Biology and Biochemistry 42: 2211–2223.

Houbraken, J., Frisvad, J.C. & Samson, R.A. 2010. Sex in Penicillium series roqueforti. IMA fungus 1: 171–180.

Kirk, J.L., Beaudette, L.A., Hart, M., Moutoglis, P., Klironomos, J.N., Lee, H. & Trevors, J.T. 2004. Methods of studying soil microbial diversity. Journal of Microbiological Methods 58: 169–188.

Kwaśna, H. 2001. Fungi in the rhizosphere of common oak and its stumps and their possible effect on infection by Armillaria. Applied Soil Ecology 17: 215–227.

Kwaśna, H. 2004. Natural shifts in communities of rhizosphere fungi of common oak after felling. Plant and soil 264: 209–218.

Kozdrój, J. & van Elsas, J.D. 2000. Application of polymerase chain reaction-denaturing gradient gel electrophoresis for comparison of direct and indirect extraction methods of soil DNA used for microbial community fingerprinting. Biology and Fertility of Soils 31: 372–378.

Linaldeddu, B.T., Scanu, B., Maddau, L. & Franceschini, A. 2014. Diplodia corticola and Phytophthora cinnamomi: the main pathogens involved in holm oak decline on Caprera Island (Italy). Forest Pathology 44: 191–200.

Melo, I.S., Santos, S.N., Rosa, L.H., Parma, M.M., Silva, L.J., Queiroz, S.C. & Pellizari, V.H. 2014. Isolation and biological activities of an endophytic Mortierella alpina strain from the Antarctic moss Schistidium antarctici. Extremophiles 18: 15–23.

Prescott, L.M., Harley, J.P. & Klein, D.A. 2005. The epidemiology of infectious disease. Pp. 821–843. In: Prescott, L.M., Harley, J.P. & Klein, D.A. (eds). Microbiology, 6th edn, McGraw-Hill, New York.

Raaijmakers, J.M., Paulitz, T.C., Steinberg, C., Alabouvette, C. & Moënne-Loccoz, Y. 2009. The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms. Plant and Soil: 341–361.

Rapilly, F. 1968. Les techniques de mycologie en pathologie végétale. INR,Paris, 102 pp.

Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W. & Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences 109: 6241–6246.

Seifert, K.A. & Gams, W. 2011. The genera of Hyphomycetes-2011 update. Persoonia. Molecular Phylogeny andEvolution of Fungi 27: 119.

Swer, H., Dkhar, M.S. & Kayang, H. 2011. Fungal population and diversity in organically amended agricultural soils of Meghalaya, India. Journal of Organic Systems 6: 3–12.

Valla, G., Capellano, A., Hugueney, R. & Moiroud, A. 1989. Penicillium nodositatum Valla, a new species inducing myconodules on Alnus roots. Plant and Soil 114: 142–146.

Visagie, C.M., Houbraken, J., Frisvad, J.C., Hong, S.B., Klaassen, C.H.W., Perrone, G., Seifert, K.A., Varga, J., Yaguchi, T. & Samson, R.A. 2014. Identification and nomenclature of the genus Penicillium. Studies in Mycology 78: 343–371.

Visagie, C.M., Houbraken, J., Rodriques, C., Pereira, C.S., Dijksterhuis, J., Seifert, K.A., Jacobs, K. & Samson, R.A. 2013. Five new Penicillium species in section Sclerotiora: a tribute to the Dutch Royal family. Persoonia 31: 42.

Vu, D., Groenewald, M., De Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G., Houbraken, J. & Boekhout, T. 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135–154.

Wang, X.W., Yang, F.Y., Meijer, M., Kraak, B., Sun, B.D., Jiang, Y.L., Wu, Y.M., Bai, F.Y., Seifert, K.A., Crous, P.W. & Samson, R.A. 2019. Redefining Humicola sensu stricto and related genera in the Chaetomiaceae. Studies in Mycology 93: 65–153.

Wang, X.W., Houbraken, J., Groenewald, J.Z., Meijer, M., Andersen, B., Nielsen, K.F., Crous, P.W. & Samson, R.A. 2016. Diversity and taxonomy of Chaetomium and chaetomium-like fungi from indoor environments. Studies in Mycology 84: 145–224.

Watanabe, T. 2002. Soil and Seed Fungi and Key to Species, Lewis Publishers, Florida, Boca Raton, 487 pp.

Wu, Y.M. & Zhang, T.Y. 2013. New species of Humicola and Endophragmiella from China. Mycotaxon 121: 147–151.  Yadav, D.R., Kim, S.W., Babu, A.G., Adhikari, M., Kim, C., Lee, H.B. & Lee, Y.S. 2014. First report of Mortierella alpina (Mortierellaceae, Zygomycota) isolated from crop field soil in Korea. Mycobiology 42: 401–404.

Zhong, S. & Steffenson, B.J. 2001. Virulence and molecular diversity in Cochliobolus sativus. Phytopathology 91: 469–476.