| تعداد نشریات | 282 |
| تعداد نشریات سازمان | 80 |
| تعداد شماره‌ها | 3,262 |
| تعداد مقالات | 36,058 |
| تعداد مشاهده مقاله | 55,181,293 |
| تعداد دریافت فایل اصل مقاله | 94,181,800 |
BIOGEOGRAPHIC RECONSTRUCTION OF THE GENUS FERULA INFERRED FROM ANALYSES OF nrDNA AND cpDNA SEQUENCES | ||
| The Iranian Journal of Botany | ||
| مقاله 1، دوره 25، شماره 2، اسفند 2019، صفحه 79-94 اصل مقاله (1.15 M) | ||
| نوع مقاله: Research Paper | ||
| شناسه دیجیتال (DOI): 10.22092/ijb.2019.126389.1241 | ||
| نویسنده | ||
| Mehrnoush Panahi* | ||
| Research Institute of forests & Rangelands, P. O. Box 13185-116, Tehran, Iran, Agricultural Research, Education and Extension Organization (AREEO). | ||
| چکیده | ||
| The divergence time of the largely Asian element, the genus Ferula L. (subtribe Ferulinae, tribe Scandiceae, Apiaceae) was initially analyzed using nrDNA, internal transcribed spacer (ITS) sequence data followed with three regions of cpDNA (rps16 and rpoC1 introns and rpoB-trnC intergenic spacers) from 141 representatives of subtribe Ferulinae (Ferula, Dorema, Leutea) and relatives. Further analyses of the biogeographical history of the Ferula group were carried out using BEAST, S-DIVA and BBM in RASP on all datasets. The results suggested that the initial split within Ferulinae occurred during Early Pliocene about 4.8 Ma and earlier ancestor of Ferula group has been originated mostly in Armeno-Iranian province. One descendent giving rises to the Ferula clade and another descendent subsequently underwent further divergence to account for Leutea lineages about 1.8-2 Ma. The rapid diversification within Ferulinae clade has occurred since the Middle Pliocene. Subsequent diversification of the Ferula clade intensified in the Irano-Turanian region during the late Pliocene in the Central Asian zone and toward west in Mediterranean zone during early Pleistocene. The ancestor of Chinese group of Ferula spread from Central Asia to eastern Asia in the Pliocene (2.2-4 Ma). The ancestor of the Mediterranean group of Ferula occurred in the West Mediterranean with high marginal probability. These diversifications likely corresponded with the Himalayas-Tibetan plateau uplift-driven climatic changes and aridification of Central Asia and also after refilling the Mediterranean basin and Zanclean flood during the Pliocene respectively. | ||
| کلیدواژه‌ها | ||
| Biogeography؛ Ferula؛ Apiaceae؛ molecular phylogeny؛ cpDNA؛ nrDNA | ||
| عنوان مقاله [English] | ||
| بیوژئوگرافی جنس فرولا (Ferula L.) از تیره چتریان برگرفته از آنالیز توالی‌های ناحیه ژنومی هسته و کلروپلاست | ||
| نویسندگان [English] | ||
| مهرنوش پناهی | ||
| استادیار پژوهشی مؤسسه تحقیقات جنگلها و مراتع کشور، سازمان تحقیقات، آموزش و ترویج کشاورزی، تهران، ایران | ||
| چکیده [English] | ||
| در این مطالعه، زمان انشقاق عنصر بزرگ آسیایی Ferula L. متعلق به زیرطایفه Ferulinae، طایفه Scandiceae، و تیره چتریان (Apiaceae) توسط توالی‌های ناحیه (ITS (Internal transcribed spacer ژنوم هسته و سه ناحیه کلروپلاستی غیرکدکننده (اینترون rps16 و اینترون rpoC1 و ناحیه بین ژنی rpoB-trnC ) تخمین زده شد. داده‌های حاصل از 141 تاکسون زیرطایفه (Ferulinae (Ferula, Dorema, Leutea به همراه گونه‌های خویشاوندشان، توسط آنالیزهایBEAST ؛ S-DIVA و BBM اجراشده در برنامه RASP مورد ارزیابی قرار گرفتند. نتایج بدست آمده مشخص نمود که شکاف اولیه درون Ferulinae در طول اوایل پلیوسن (حدود 8/4 میلیون سال قبل) رخ داده و تاکسون‌های دودمان اولیه این زیرطایفه عمدتاً از پروانس ارمنستان-ایران منشاء گرفته‌اند. بنابراین یک انشعاب اجدادی به اعضای گروه Ferula منجر شده و متعاقباً انشعاب دیگر تحت انشقاق بیشتر اعضای دودمان Leutea را (حدود 8/1 الی 2 میلیون سال قبل) پدید آورده است. تنوع‌یابی درون گروه Ferula، در ناحیه ایرانو-تورانی صورت گرفته به‌طوریکه در اواخر پلیوسن در ناحیه آسیای مرکزی و در ابتدای پلیستوسن به سمت غرب در ناحیه مدیترانه‌ای تشدید شده است. اجداد گونه‌های شرق دورFerula، در دوره پلیوسن (2/2-4 میلیون سال قبل) از آسیای مرکزی به سمت آسیای شرقی گسترش یافته و اجداد گروه مدیترانه‌ای در ناحیه مدیترانه غربی با ضریب احتمالی بالا تنوع یافته‌اند. احتمالا این انشقاق‌ها به ترتیب با بالا آمدن صفحه هیمالیا- تبت، تغییرات اقلیمی و خشک شدن حوزه آسیای مرکزی، و همچنین دوباره پرشدن حوزه مدیترانه‌ای و جریان Zanclean در پلیوسن ارتباط دارد. | ||
| کلیدواژه‌ها [English] | ||
| Biogeography, Ferula, Apiaceae, molecular phylogeny, cpDNA, nrDNA | ||
| مراجع | ||
|
Ali, S. Sh., Yu, Y., Pfosser, M. and Wetsching, W. 2012: Inferences of biogeographical histories within subfamily Hyacinthoideae using S-DIVA and Bayesian binary MCMC analysis implemented in RASP (Reconstruct Ancestral State in Phylogenies). –Ann. Bot. 109: 95-107.
Banasiak, L., Piwczynski, M., Ulinski, T., Downie, S. R., Watson, M. F., Shakya, B. and Spalik, K. 2013: Dispersal patterns in space and time: a case study of Apiaceae subfamily Apioideae. -J. Biogeogr. 40 (7): 1324-1335.
Banasiak, Ł., Wojewódzka, A., Baczyński, J., Reduron, J. P., Piwczyński, M., Kurzyna-Młynik, R., Gutaker, R., Czarnocka-Cieciura, A., Kosmala-Grzechnik, S. and Spalik, K. 2016: Phylogeny of Apiaceae subtribe Daucinae and the taxonomic delineation of its genera. –Taxon. 65: 563–585.
Boissier, P. E. 1867: Flora Orientalis. - H. Georg, Basel & Geneva, Switzerland.
Brown, R. P. and Yang, Z. 2010: Bayesian dating of shallow phylogenies with a relaxed clock. –Syst. Biol. 59 (2): 119-131.
Buerki, S., Forest, F., Alvarez, N., Nylander, J. A. A., Arrigo, N. and Sanmartin, I. 2011: An evaluation of new parsimony-based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae. –J. Biogeogr. 38 (3): 531-550.
Calviño, C. I., Martínez, S. G. and Downie, S. R. 2008: Morphology and biogeography of Apiaceae subfamily Saniculoideae as inferred by phylogenetic analysis of molecular data. –Am. J. Bot. 95 (2): 196-214.
Calviño, C. I., Tilney, P. M., Van Wyk, B. E. and Downie, S. R. 2006: A molecular phylogenetic study of southern African Apiaceae. –Am. J. Bot. 93 (12): 1828–1847.
Cannon, J. F. M. 1968: Ferula L. – In: Tutin, T. G., Heywood, V. H., Burges, N. A., Valentine, D. H., Walters, S. M. and Webb, D. A., eds. Flora Europaea, Vol. 2: 358-359. -Cambridge University Press, Cambridge.
Chamberlain, D. F. and Rechinger, K. H. 1987: Ferula L., In: Hedge, I. C., Lamond, J. M. and Rechinger, K. H., eds. Umbelliferae, Flora Iranica, Vol. 162: 387-426. -Graz: Akademische Druck-und Verlagsanstalt.
Chandler, G. T. and Plunkett, G. M. 2004: Evolution in Apiales: nuclear and chloroplast markers together in (almost) perfect harmony. –Bot. J. Linn. Soc. 144: 123–147.
Davis, S. D., Heywood, V. H. and Hamilton, A. C. 1994: Centers of plant diversity. A guide and strategy for their conservation. -IUCN Publications Unit, Cambridge, UK.
Djamali, M., Brewer, S., Breckel, S. W. and Jackson, S. T. 2012: Climatic determinism in phytogeographic regionalization: A test from the Irano-Turanian region, SW and Central Asia. -Flora, 207: 237-249.
Downie, S. R., Plunkett, G. M., Watson, M. F., Spalik, K., Katz-Downie, D. S., Valiejo-Roman, C. M., Terentieva, E. I., Troitsky, A. V., Lee, B. Y., Lahham, J. and El-OQlah, A. 2001: Tribes and clades within Apiaceae subfamily Apioideae: The contribution of molecular data. –Edinb. J. Bot. 58 (2): 301-330.
Drummond, A. J., Ho, S. Y. W., Phillips, M. J. and Rambaut, A. 2006: Relaxed phylogenetics and dating with confidence. -PLOS Biol. 4 (5), e88: 0699-0710.
Drummond, A. J. and Rambaut, A. 2007: Beast: Bayesian evolutionary analysis by sampling trees. -BMC Evol. Biol. 7: 214.
Favre, A., Päckert, M., Pauls, S. U., Jähnig, S. C., Uhl, D., Michalak, I. and Muellner-Riehl, A. N. 2015: The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas. -Biol. Rev. 90: 236-253.
Guo, Z. T., Peng, S. Z. and Hao, Q. Z. 2004: Late Miocene-Pliocene development of Asian aridification as recorded in an eolian sequence in northern China. -Glob. Planet. Change, 41: 135–145.
Jolivet, L., Augier, R., Robin, C., Suc, J. P. and Rouchy, J. M. 2006: Lithospheric-scale geodynamic context of the Messinian salinity crisis. Sediment. Geol. 188-189: 9-33.
Kadereit, J. W., Repplinger, M., Schmalz, N., Uhink, CH. and Wörz, A. 2008: The phylogeny and biogeography of Apiaceae subf. Saniculoideae tribe Saniculeae: from south to north and south again. -Taxon, 57 (2): 365-382.
Korovin, E. P. 1940: Differentsiruyuschchaya rol uslovii suschchestvovaniya v evolutsii rasteniy. Rod Ferula L., In: Keller, B. A., ed. Rasteniye i sreda. Izdat. 237-274. -Akademii Nauk SSSR., Moskva.
Korovin, E. P. 1947: Generis Ferula (Tourn.) L. Monographia illustrata. -Tashkent: Academiae Scientiarum UzRSS.
Kurzyna-Młynik, R., Oskolski, A. A., Downie, S. R., Kopacz, R., Wojewódzka, A. and Spalik, K. 2008: Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation. -Pl. Syst. Evol. 274: 47-66.
Li, Q. Q., Zhuo, S. D., He, X. J., Yu, Y., Zhang, Y. C., and Wei, X. Q. 2010: Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China. -Ann. Bot. 106: 709-733.
Liao, C., Downie, S. R., Li, Q., Yu, Y., He, X. and Zhou, B. 2013: New insights into the phylogeny of Angelica and its allies (Apiaceae) with emphasis on East Asian species, inferred from nrDNA, cpDNA and morphological evidence. -Syst. Bot. 38 (1): 266-281.
Lamm, K. S. and Redelings, B. D. 2009: Reconstructing ancestral ranges in historical biogeography: properties and prospects. -J. Syst. Evol. 47 (5): 369-382.
Maddison, W. P. and Maddison, D. R. 2017: Mesquite: A modular system for evolutionary analysis. Version 3. 2. Available at: http://mesquiteproject. org.
Madjnoonian, H. 1999: A synopsis of the vegetation of Iran. In: Frey, W. and Probst, W. (eds.), Phytogeography of Iran (In Persian). pp: 23-56. -Department of the Environment I. R. Iran.
Matzke, N. J. 2014: Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. –Syst. Biol. 63: 951-970.
Médail, F., and Diadema, K. 2009: Glacial refugia influence plant diversity patterns in the Mediterranean Basin. -J. Biogeogr. 36 (7): 1333-1345.
Nylander, J. A. A., Olsson, U., Alström, P. and Sanmartín, I. 2008: Accounting for phylogenetic uncertainty in biogeography: A bayesian approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus). -Syst. Biol. 57 (2): 257-268.
Panahi, M., Banasiak, Ł., Piwczyński, M., Puchałka, R., Oskolski, A. A., and Spalik, K. 2015: Phylogenetic relationships among Dorema, Ferula and Leutea (Apiaceae, Scandiceae, Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences. –Taxon, 64:770–83.
Panahi, M., Banasiak, Ł., Piwczyński, M., Puchałka, R., Kanani, M. R., Oskolski, A. A., Modnicki, D., Miłobedzka, A. and Spalik, K. 2018: Taxonomy of a traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA. -Bot. J. Linn. Soc. 188: 1-17.
Pérez-Collazos, E., and Catalán, P. 2007: Genetic diversity analysis and conservation implications for the Iberian threatened populations of the Irano-Turanian relict Krascheninnikovia ceratoides (Chenopodiaceae). –Biol. J. Linn. Soc. 92: 419-429.
Pérez-Collazos, E., Sanchez-Gómez, P., Jiménez, J. F. and Catalán, P. 2009: The phylogeographical history of the Iberian steppe plant Ferula loscosii(Apiaceae): a test of the abundant-center hypothesis. -Mol. Ecol. 18: 848-861.
Pimenov, M. G., and Leonov, M. V. 1993: The genera of the Umbelliferae. -Royal Botanic Gardens, Kew.
Pleines, T., Jakob, S. S. and Blattner, F. R. 2009: Application of non-coding DNA regions in intraspecific analyses. -Pl. Syst. Evol. 282: 281-294.
Plunkett, G. M., Soltis, D. E. and Soltis, P. S. 1996: Evolutionary patterns in Apiaceae: Inferences based on matK sequence data. –Syst. Bot. 21 (4): 477- 495.
Rambaut, A., Drummond, A. J., Xie, D., Baele, G., and Suchard, M. A. 2018: Posterior summarization in bayesian phylogenetics using Tracer 1. 7. -Syst. Biol. 67 (5): 901-904.
Riddle, B. R., Dawson, M. N., Hadly, E. A., Hafner, D. J., Hickerson, M. J., Mantooth, S. J. and Yoder, A. D. 2008: The role of molecular genetics in sculpting the future of integrative biogeography. –Prog. Phys. Geogr. 32 (2): 173-202.
Rögl, F. 1999: Mediterranean and Paratethys. Facts and hypotheses of an Oligocene to Miocene paleogeography (short overview). –Geol. Carpath. 50 (4): 339-349.
Ronquist, F. and Huelsenbeck, J. P. 2003: MrBayes 3: Bayesian phylogenetic inference under mixed models. -Bioinformatics, 19: 1572-1574.
Sang, T., Crawford, D. J., Kim, S. C. and Stuessy, T. F. 1994: Radiation of the endemic genus Dendroseris(Asteraceae) on the Jaun Fernandez Islands: evidence from sequences of the ITS regions of nuclear ribosomal DNA. –Am. J. Bot. 81: 1494-1501.
Sanmartin, I. 2012: Historical biogeography: Evolution in time and space. –Evo Edu Outreach, 5: 555-568.
She, M., Pu, F., Pan, Z., Watson, M. F., Cannon, J. F. M., Holmes-Smith, I., Kljuykov, E. V., Phillippe, L. R. and Pimenov, M. G. 2005: Apiaceae (Umbelliferae). In: Flora of China Editorial Committee, ed. Flora of China, Vol. 14: 1-250. -St. Louis: Missouri Botanical Garden.
Spalik, K., Piwczynski, M., Danderson, C. A., Kurzyna-Mlynik, R., Bone, T. S., and Downie, S. R. 2010: Amphitropic amphiantarctic disjunctions in Apiaceae subfamily Apioideae. –J. Biogeogr. 37: 1977-1994.
Suchard, M. A., Lemey, P., Baele, G., Ayres, D. L., Drummond, A. J. and Rambaut, A. 2018: Bayesian phylogenetic and phylodynamic data integration using BEAST 1. 10. -Virus Evolution, 4 (1): vey016.
Takhtajan, A. 1986: Floristic regions of the world. -University of California Press, Berkeley, CA.
Thorne, J. L., Kishino, H., and Painter, I. S. 1998: Estimating the rate of evolution of the rate of molecular evolution. –Mol. Biol. Evol. 15 (12): 1647- 1657.
Wang, Q. Z., He, X. J., Zhou, S. D., Wu, Y. K., Yu, Y. and Pang, Y. L. 2008: Phylogenetic inference of the genus Bupleurum (Apiaceae) in Hengduan Mountains based on chromosome counts and nuclear ribosomal DNA ITS sequences. –J. Syst. Evol. 46 (2): 142-154.
Weir, J. T. and Schluter, D. 2008: Calibrating the avian molecular clock. –Mol. Ecol. 17: 2321-2328.
Wen, J., Lowry, II. P. P., Walck, J. L. and Yoo, K. O. 2002: Phylogenetic and biogeographic diversification in Osmorhiza (Apiaceae). –Ann. Missouri Bot. Gard. 89: 414-428.
Wen, J., Zhang, J. Q., Nie, Z. L., Zhong, Y. and Sun, H. 2014: Evolutionary of diversifications of plants on the Qinghai-Tibetan Plateau. -Frontiers in Genetics, 5: 1-16.
White, F., and Léonard, J. 1991: Phytogeographical links between Africa and Southwest Asia. -Flora et Vegetatio Mundi, 9: 229-246.
Willis, K. J. 1996: Where did all the flowers go? The fate of temperate European flora during glacial periods. -Endeavour, 20: 110-114.
Yang, Z. 2006: Computational molecular evolution. Pp: 107-108. -Oxford University Press, New York.
Yu, Y., Harris, A. J. and He, X. J. 2010: S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories. –Mol. Phylogenetics Evol. 56: 848-850.
Yu, Y., Harris, A. J., Blair, C. and He, X. 2015: RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography. –Mol. Phylogenetics Evol. 87: 46-49. Available at http://mnh. scu. edu. cn/soft/blog/RASP
Zhang, G., Basharat, U., Matzke, N. and Franz, N. M. 2017: Model selection in statistical historical biogeography of Neotropical insects__ The Exophthalmus genus complex (Curculionidae: Entiminae). –Mol. Phylogenetics Evol. 109: 226-239.
Zohary, M. 1973: Geobotanical foundations of the Middle East. 2 vols. -Fisher, Stuttgart.
| ||
|
آمار تعداد مشاهده مقاله: 1,430 تعداد دریافت فایل اصل مقاله: 1,248 |
||