Molecular identification of basidiomycetous yeasts from soils in Iran

Bandoni, R.J. 1979. Fibulobasidium: a new genus in the Sirobasidiaceae. Canadian Journal of Botany 57: 264–268.

Begerow, D., Bauer, R. & Oberwinkler F. 1997. Phylogenetic studies on nuclear large subunit ribosomal DNA sequences of smut fungi and related taxa. Canadian Journal of Botany 75: 2045–2056.

Bergauer, P., Fonteyne, P.A., Nolard, N., Schinner, F. & Margesin, R. 2005. Biodegradation of phenol and phenolrelatedcompounds by psychrophilic and cold-tolerant alpine yeasts. Chemosphere 59: 909–918.

Bolano, A., Stinchi, S., Preziosi, R., Bistoni, F., Allegrucci, M., Baldelli, F., Martini, A. & Cardinali, G. 2001. Rapid methods to extract DNA and RNA from Cryptococcus neoformans. FEMS Yeast Research 1: 221–224.

Butinar, L., Spencer-Martins, I. & Gunde-Cimerman, N. 2007. Yeasts in high arctic glaciers: the discovery of a new habitat for eukaryotic microorganisms. Antonie van Leeuwenhoek 97: 277–289.

Deák, T. 2006. Environmental factors influencing yeasts. In: Rosa, C.A. & Peter, G. (eds). Biodiversity and

 

 

Ecophysiology of Yeasts. Springer-Verlag, Berlin, pp. 155–174.

Cantrell, S.A., Dianese, J.C., Fell, J., Gunde-Cimerman, N. &  Zalar, P. 2011. Unusual fungal niches, Mycologia 103: 1161–1174.

Diddens, H.A. & Lodder, J. 1942. Die anaskosporogenen Hefen, II. Hälfte. North-Holland, Amsterdam.

de Garc´ıa, V., Brizzio, S., Libkind, D., Buzzini, P. & van Broock, M. 2007. Biodiversity of cold-adapted yeasts from glacial meltwater rivers in Patagonia, Argentina. FEMS Microbiology and Ecology 59: 331–341.

de Garcia, V., Brizzio, S., Russo, G., Rosa C.A., Boekhout, T., Theelen, B., Libkind, D. &
van Broock, M. 2010. Cryptococcus spencermartinsiae sp. nov., a basidiomycetous yeast isolated from glacial waters and apple fruits. International Journal of Systematic and Evolutionary Microbiology 60: 707–711.

di Menna, M.E. 1954. Debaryomyces marama n. sp., isolatedfrom the air. Journal of General Microbiology 10: 65–67.

Dunlap, C.A., Evans, K.O., Theelen, B., Boekhout, T. & Schisler, D.A. 2007. Osmotic shock tolerance and membrane fluidity of cold-adapted Cryptococcus flavescens OH 182.9, previously reported as
C. nodaensis, a biocontrol agent of fusarium head blight. FEMS Yeast Research 7: 449–458.

Faizutdinova, R.N., Suzina, N.E., Duda, V.I., Petrovskaya. L.E. & Gilichinsky, D.A. 2005. Yeasts isolated from ancient permafrost. In: Castello, J.D. & Rogers, S.O. (eds). Life in Ancient Ice. Princeton University Press, Princeton, NJ, pp. 118–126.

Fell, J.W., Boekhout, T., Fonseca, A., Scorzetti, G. & Statzell-Tallman, A. 2000. Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. International Journal of Systematic and Evolutionary Microbiology 50: 1351–1371.

Fonseca, Á., Scorzetti, G. & Fell, J.W. 2000. Diversity in the yeast Cryptococcus albidus and related species as revealed by ribosomal DNA sequence analysis. Canadian Journal of Microbiology 46: 7–27.

Fonseca, A. & In´acio, J. 2006. Phylloplane yeasts, pp. 263–301. In: Rosa, C.A. & Péter, G. (eds). The Yeast Handbook; Biodiversity and Ecophysiology of Yeasts, Springer-Verlag, Berlin.

Fonseca, A., Boekhout, T. & Fell, J.W. 2011. Cryptococcus Vuillemin (1901), pp. 1661–1737. In: Kurtzman, C.P., Fell, J.W. & Boekhout, T. (eds). The Yeasts: A Taxonomic Study, 5th ed., Elsevier, Amsterdam.

Gadanho, M. & Sampaio, J.P. 2002. Polyphasic taxonomic of the basidiomycetous yeasts genus Rhodotorula: R. glutinis sensu stricto and
R. dairenensis comb. nov. FEMS Yeast Research 2: 47–58.

Gadanho, M., Almeida, J.M.G.C.F. & Sampaio, J.P. 2003. Assessment of yeast diversity in a marine environment inthe south of Portugal by microsatellite-primed PCR. Antonie van Leeuwenhoek 84: 217–227.

Gadanho, M. & Sampaio, J.P. 2005. Occurrence and diversity of yeasts in the mid-atlantic ridge hydrothermal fields near the Azores Archipelago. Microbiology and Ecology 50: 408–417.

Gildemacher, P.R., Heijne, B., Houbraken, J., Vromans, T. Hoekstra, E.S. & Boekhout, T. 2004. Can phyllosphere yeasts explain the effect of scab fungicides on russeting of Elstar apples. European Journal of Plant Pathology 110: 929–937.

 Gildemacher, P., Heijne, B., Silvestri, M., Houbraken, J., Hoekstra, E. & Boekhout, T. 2006. Interactions between yeasts, fungicides and apple fruit russeting. FEMS Yeast Research 6: 1149–1156.

Golubev, W.I. 1981. Novye kombinatsii drozhzhevykh gribov roda Cryptococcus. Mikologia I Fitopatologia 15: 467–468.

Golonka, A.M. 2002. Nectar-inhabiting microorganisms and the dioecious plant species Silene latifolia. PhD Thesis, Duke University, Durham, NC,
pp. 87–95.

Golubev, W.I. 1993. Rhodosporidium babjevae, a new heterothallic yeast species (Ustilaginales). Systematic and Applied Microbiology 16:
445–449.

Golubev, W.I., Sampaio, J.P., Alves, L. & Golubev, N.W. 2004. Cryptococcus festucosus sp. nov.: a new hymenomycetous yeast in the Holtermannia clade. Canadian Journal of Microbiology 50: 1001–1006.

Goto, S. & Sugiyama, J. 1970. Studies on Himalayan yeasts and molds (IV). Several asporogenous yeasts, including two new taxa of Cryptococcus. Canadian Journal of Botany 48: 2097–2101.

Guffogg, S.O., Thomas-Hall, S., Holloway, P. & Watson., K. 2004. A novel psychrotolerant member of the hymenomycetous yeasts from Antarctica: Cryptococcus watticus sp. nov. International Journal of Systematic and Evolutionary Microbiology 54: 275–277.

Hamamoto, M., Sugiyama, J. & Komagata, K. 1988. Rhodosporidium kratochvilovae sp. nov., a new basidiomycetous yeast species. Journal of General and Applied Microbiology34: 119–125.

Harrison, F.C. 1928. Cheese torulae. Transactions of the Royal Society of Canada 3^rd. Ser. 21, Sect. 5: 341–380.

Herzberg, M., Fischer, R. & Titze, A. 2002. Conflicting results obtained by RAPD-PCR and large-subunit rDNA sequences in determining and comparing yeast strains isolated from flowers: a comparison of two methods. International Journal of Systematic Evolutionary Microbiology 52:
1423–1433.

Hong, S.G., Lee, K.H., & Bae, K.S. 2002. Diversity of yeasts associated with natural environments in Korea. Journal of Microbiology 40: 55–62.

Hong, S.G., Lee, K.H., Kwak, J. & Bae, K.S. 2006. Diversity of yeasts associated with Panax ginseng. Journal of Microbiology 44: 674–679.

Hughes, J.B., Hellmann, J.J., Richetts, T.H. & Bohannan, B.J.M. 2001. Coumting the uncountable: statical approaches to estimating microbial diversity. Applied Environmental Microbiology 67(10): 4399–4406.

Ikeda, R., Sugita, T. & Shinoda, T. 2000. Serological relationships of Cryptococcus spp.: distribution of antigenic factors in Cryptococcus and intraspecies diversity. Journal of Clinical Microbiology 38: 4021–4025.

Ina´cio, J., Portugal, L., Spencer-Martins, I. & Fonseca, A. 2005. Phylloplane yeasts from Portugal: seven novel anamorphic species in the Tremellales lineage of the Hymenomycetes (Basidiomycota) producing orange-coloured colonies. FEMS Yeast Research 5: 1167–1183.

Kurtzman, C.P. 1973. Formation of hyphae and chlamydospores by Cryptococcus laurentii. Mycologia 65: 388–395.

Kurtzman, C.P. & Robnett, C.J. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73: 331–371.

Kurtzman, C.P., Fell, J.W., Boekhout, T. & Robert, V. 2011. Methods for isolation, phenotypic characterization and maintenance of yeasts. pp. 87–110. In: Kurtzman, C.P., Fell, J.W. & Boekhout, T. (eds). The Yeasts: A Taxonomic Study, 5th ed., Elsevier, Amsterdam.

Lachance, M.A. & Starmer, W.T. 1998. Ecology and yeasts. pp. 21–30. In: Kurtzman, C.P. & Fell, J.W. (eds). The yeasts, a taxonomic study. 4th ed. Elsevier, Amsterdam.

Lachance, M.A., Starmer, W.T., Rosa, C.A., Bowles, J.M., Stuart, J., Barker, F. & Janzen, D.H. 2001. Biogeography of the yeasts of ephemeral flowers and their insects. FEMS Yeast Research 1: 1–8.

Laitila, A., Wilhelmson, A., Kotaviita, E., Olkku, J., Home. S. & Juvonen, R. 2006. Yeasts in an industrial malting ecosystem. Journal of Indian Microbiology and Biotechnology 33: 953–966

Libkind, D., Brizzio, S., Ruffini, A., Gadanho, M., van Broock, M. & Sampaio, P. 2003. Molecular characterization of carotenogenic yeasts from aquatic environments in Patagonia, Argentina. Antonie van Leeuwenhoek 84: 313–322.

Libkind, D., Molin´e, M., Sampaio, J.P. & van Broock, M. 2009. Yeasts from high-altitude lakes: influence of UV radiation. FEMS Microbiology and Ecology 69: 353–362.

Lee, J.S., Kang, E.J., Kim, M.O., Lee, D.H., Bae, K.S. & Kim, C.K. 2001. Identification of Yarrowia lipolytica Y103 and its degradability of phenol and 4-chlorophenol. Journal of Microbiology and Biotechnology 11: 112–117.

Lodder, J. & Kreger-van Rij, N.J.W. 1952. The Yeasts, A Taxonomic Study. North-Holland, Amsterdam. 713 p.

Maksimova, I.A. & Chernov, I.Yu. 2004. Community structure of yeast fungi in forest biogeocenoses. Microbiology (Moscow) 73: 474–481 (Translated from Mikrobiologia 73: 558–566).

Montes, M.J., Belloch, C., Galiana, M., Garcia, M.D., Andres, C., Ferrer, S., Torres-Rodriguez, J.M. & Guinea, J 1999. Polyphasic taxonomy of a novel yeast isolated from antarctic environment; description of Cryptococcus victoriae sp. nov. Systematic and Applied Microbiology 22:
97–105.

Middelhoven, W.J., Scorzetti, G. & Fell, J.W. 2004. Systematics of the anamorphic basidomycetous yeast genus Trichosporon Behrend with the description of five novel species: Trichosporon vadense, T. smithiae, T. dehoogii,
T. scarabaeorum, and T. gamsii. International Journal of Systematic and Evolutionary Microbiology 54: 975–986.

Nagahama, T., Hamamoto, M., Nakase, T. & Horikoshi, K. 2003. Rhodotorula benthica sp. nov. and Rhodotorula calyptogenae sp. nov., novel yeast species from animals collected from the deep-sea floor, and Rhodotorula lysiniphila sp. nov., which is related phylogenetically. International Journal of Systematic Evolutionary Microbiology 53: 897–903.

Newell, S.Y. & Fell, J.W. 1970. The perfect form of a marine-occurring yeast of the genus Rhodotorula. Mycologia 62: 272–281.

Newell, S.Y. & Hunter, I.L. 1970. Rhodosporidium diobovatum sp. n., the perfect form of an asporogenous yeast (Rhodotorula sp.). Journal of Bacteriology 104: 503–508.

Nunez, F., Rodriguez, M.M., Cordoba, J.J., Bermudez, M.E. & Asensio, M.A. 1996. Yeast population during ripening of drycured Iberian ham. International Journal of Food Microbiology 29: 271–280.

Pollacci, G. & Nannizzi, A. 1927. I Miceti Patogenidell’Uomo e degli Animali, Vol. 5. Capelli, Bologna, pp. 228–241.

Reiersöl, S. 1955. Species of Rhodotorula isolated from laryngeal swabs. Antonie van Leeuwenhoek 21: 286–289.

Robiglio, A., Sosa, C.M., Lutz, M.C., Lopes, C.A. & Sangorrin, M.P. 2011. Yeast biocontrol of fungal spoilage of pears stored at low temperature. International Journal of Food Microbiology 147: 211–216.

Romer, M., Hammer, E., Cazau, M.C., & Arambarri, A.M. 2002. Isolation and characterization of biarylic structuredegrading yeasts: hydroxylation potential of dibenzofuran. Enviromental. Pollution 118: 379–382.

Russo, G., Libkind, D., Sampaio, J.P. & van Broock, M.R. 2008. Yeast diversity in the acidic Rio Agrio-Lake Caviahue volcanic environment (Patagonia, Argentina). FEMS Microbiology and Ecology 65: 415–424.

Sampaio, J.P, Gadanho, M., Santos, S., Duarte, F., Pais, C., Fonseca, A. & Fell, J.W. 2001. Polyphasic taxonomy of the basidiomycetous yeast genus Rhodosporidium: Rhodosporidium kratochvilovae and related anamorphic species. International Journal of Systematic Evolutary and Microbiology 51: 687–697.

Sampaio, J.P., Weiß, M., Gadanho, M. & Bauer, M. 2002. New taxa in the Tremellales: Bulleribasidium oberjochense gen. et sp. nov., Papilotrema bandonii gen. et sp. nov. and Fibulobasidium murrhardtense sp. nov. Mycologia 94: 873–887.

Sampaio, J.P. 2004. Diversity, phylogeny and classification of basidiomycetous yeasts, pp.
49–80. In: Agerer, R., Blanz, P. & Piepenbring, M. (eds). Frontiers in Basidiomycete Mycology, IHW Verlag, Eching, 49 pp.

Selbmann, L., Zucconi, L., Onofri, S., Cecchini, C., Isola, D., Turchetti., B. & Buzzini. P. 2014. Taxonomic and phenotypic characterization of yeasts isolated from worldwide cold rock-associated habitats. Fungal Biology 118 (1):
61–71.

Scorzetti, G., Fell, J.W., Fonseca, A. & Staltzell-Tallman, A. 2002. Systematic of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Research 2: 495–517.

Skinner, C.E. 1950. Generic name for imperfect yeasts, Cryptococcus or Torulopsis? The American Midland Naturalist Journal 43: 242–250.

Slavikova, E. & Vadkertiova, R. 2000. The occurrence of yeasts in the forest soils. Journal of Basic Microbiology 40: 207–212.

Strauss, M.L.A., Jolly, N.P., Lambrechts M.G. & van Rensburg, P. 2001. Screening for the production of extracellular hydrolytic enzymes by non-Saccharomyces wine yeasts. Journal of Applied Microbiology 91: 182–190.

Sugita, T., Takashima, M., Ikeda, R., Nakase, T., & Shinoda, T. 2001. Intraspecies diversity of Cryptococcus albidus isolated from human as revealed by sequences of internal transcribed spacer regions. Microbiology and Immunology 45: 291–297.

Takashima, M., Sugita, T., Shinoda, T. & Nakase, T. 2001.Reclassification of the Cryptococcus humicola complex.International Journal of Systematic and Evolutionary Microbiology51: 2199–2210.

Turchetti, B., Buzzini, P., Goretti, M., Branda, E., Diolaiuti, G., D’Agata, C., Smiraglia, C. & Vaughan-Martini, A. 2008. Psychrophilic yeasts in glacial environments of Alpine glaciers. FEMS Microbiology Ecology 63: 73–83.

Vishniac, H.S. 1985. Cryptococcus friedmannii, a new species of yeast from the Antarctic. Mycologia 77: 149–153.

Vishniac, H.S. & Kurtzman, C.P. 1992. Cryptococcus antarcticus sp. nov. and Cryptococcus albidosimilis sp. nov., basidioblastomycetes from Antarctic soils. International Journal of Systematic Bacteriology Microbiology 42:
547–553.

Vishniac, H.S. 1995. Simulated in situ competitive ability and survival of a representative soil yeast, Cryptococcus albidus.  Microbiology and Ecology 30: 309–320.

Vishniac, H.S. 2006. A multivariate analysis of soil yeasts isolated from a latitudinal gradient. Microbiology and Ecology 52: 90–103.

Wouter, J.M. & Kurtzman, C.P. 2003. Relation between phylogeny and physiology in some ascomycetous yeasts. Antonie van Leeuwenhoek 83: 69–74.

Wuczkowski, M., Sterflinger, K., Kraus, G.F., Klug, B. & Prillinger, H. 2003. Diversity of microfungi and yeasts in soils of the alluvial zone national park along the river Danube downstream of
Vienna,  Austria (‘‘Nationalpark Donauauen’’). Bodenkultur 54: 109–118.

Wuczkowski, M., Passoth, V., Turchetti, B., Andersson, A.C., Olstorpe, M., Laitila, A., Theelen, B., van Broock, M., Buzzini, P., Prillinger, H., Sterflinger, K., Schnürer, J., Boekhout, T. & Libkind, D. 2010. Description of Holtermanniella takashima sp. nov., Holtermanniella gen. nov. and proposal of the order Holtermanniales to accommodate Tremellomycetous yeasts of the Holtermania clade. International Journal of Systematic Evolutionary and Microbiology 9: 180–194.